Pre-heat oven to 350 degrees.
Chop peppers and onion and place into a small bowl.
Add cheeses to vegetables in small bowl and toss to mix.
In a large bowl, add eggs, egg whites, salt and pepper.
Whisk eggs together.
Spray 12 count muffin tin with cooking spray.
Place 1/2 teaspoon of bacon on the bottom of each tin.
Divide vegetable and cheese mixture between each tin, about 2 tablespoons per tin.
Evenly distribute egg mixture between each tin.
Bake for 22 - 25 minutes, eggs will puff up but de-puff when cooled.
Let cool for 5-10 minutes, run a knife around the edges to loosen from pan and transfer muffins to cooling rack.
Freeze muffins.
To enjoy, reheat in microwave for about 1 minute.